I think other scattered error messages from YaCy can be collected in this topic.
Here are the latest messages that appeared after my list:
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Violation of the structure of the index base (apparently similar to what I observed): Yacy decided to not recognize my ~60 GB Index anymore a few months ago (+ webcrawler not working; data does still exists)
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infinite indexing loop and index base access violation: Delete domain info from index
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index size limit (probably related to the use of Long variables): Solr error: number of documents in the index cannot exceed 2147483519
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For unknown reasons, the peer loses its name: Peer name changed on its own